Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX251241: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-221906' containing sample 'Escherichia coli HVH 223 (4-2976528)'
2 ILLUMINA (Illumina HiSeq 2000) runs: 5.3M spots, 1.1G bases, 526.4Mb downloads

UUID: 7719ef83-2d51-4d10-a606-02c14de50d89

Design: Illumina sequencing of Escherichia coli HVH 223 (4-2976528) via random selection

Submitted by: Broad Institute (BI)

Study: E coli UTI Bacteremia

PRJNA186250 • SRP019544 • All experiments • All runs

Sample: Pathogen bacterial, clinical or host-associated sample from Escherichia coli HVH 223 (4-2976528)

SAMN01885861 • SRS402157 • All experiments • All runs

Organism: Escherichia coli HVH 223 (4-2976528)

Library:

Name: Pond-221906

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 12 attributes...) (hide...)

analysis_type: AssemblyWithReference

gssr_id: 290059.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:3VROL

material_type: DNA:DNA Somatic

product_order: PDO-291

product_part_number: P-MCV-0001

project: G30265

research_project: RP-192

root_sample_id: SM-2TD39

sample_id: SM-3VROL

work_request: 35134

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-03-08 22:34:25.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 2 runs, 5.3M spots, 1.1G bases, 526.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR784919	2,647,404	534.8M	265.3Mb	2013-03-18
SRR784920	2,613,483	527.9M	261.1Mb	2013-03-18

ID:: 351165

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